Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03300

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03295 and BPHYT_RS03300 are separated by 5 nucleotidesBPHYT_RS03300 and BPHYT_RS03305 are separated by 152 nucleotides BPHYT_RS03295: BPHYT_RS03295 - molecular chaperone SurA, at 742,586 to 743,947 _RS03295 BPHYT_RS03300: BPHYT_RS03300 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 743,953 to 744,963 _RS03300 BPHYT_RS03305: BPHYT_RS03305 - ribosomal RNA small subunit methyltransferase A, at 745,116 to 745,946 _RS03305 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1at 745.944 kb on + strandat 745.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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745,944 + -0.2
745,945 - -2.7

Or see this region's nucleotide sequence