Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00005

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS00005 and BPHYT_RS00010 are separated by 220 nucleotides BPHYT_RS00005: BPHYT_RS00005 - chromosomal replication initiator protein DnaA, at 299 to 1,936 _RS00005 BPHYT_RS00010: BPHYT_RS00010 - DNA polymerase III subunit beta, at 2,157 to 3,260 _RS00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.117 kb on + strandat 0.130 kb on + strandat 0.130 kb on + strandat 0.206 kb on + strandat 2.017 kb on + strandat 2.017 kb on + strandat 2.017 kb on + strandat 2.017 kb on + strandat 2.017 kb on + strandat 2.137 kb on + strandat 2.137 kb on + strandat 2.137 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
117 + -2.6
130 + -0.3
130 + -0.6
206 + -0.3
2,017 + +0.3
2,017 + -0.5
2,017 + +0.2
2,017 + -0.3
2,017 + +0.5
2,137 + -0.4
2,137 + -0.4
2,137 + +1.1

Or see this region's nucleotide sequence