Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23940 and HSERO_RS23945 are separated by 64 nucleotides HSERO_RS23945 and HSERO_RS23950 are separated by 18 nucleotides HSERO_RS23950 and HSERO_RS23955 are separated by 51 nucleotides
HSERO_RS23940: HSERO_RS23940 - chromosome partitioning protein ParB, at 5,489,876 to 5,490,790
_RS23940
HSERO_RS23945: HSERO_RS23945 - cobyric acid synthase CobQ, at 5,490,855 to 5,491,625
_RS23945
HSERO_RS23950: HSERO_RS23950 - amino acid transporter LysE, at 5,491,644 to 5,492,276
_RS23950
HSERO_RS23955: HSERO_RS23955 - membrane protein, at 5,492,328 to 5,492,864
_RS23955
Position (kb) 5490
5491
5492 Strain fitness (log2 ratio) -1
0
1 at 5490.870 kb on - strand at 5490.870 kb on - strand at 5491.143 kb on - strand, within HSERO_RS23945 at 5491.181 kb on + strand, within HSERO_RS23945 at 5491.327 kb on - strand, within HSERO_RS23945 at 5491.500 kb on - strand, within HSERO_RS23945 at 5491.539 kb on - strand, within HSERO_RS23945 at 5491.679 kb on + strand at 5492.076 kb on + strand, within HSERO_RS23950 at 5492.122 kb on - strand, within HSERO_RS23950 at 5492.221 kb on - strand at 5492.366 kb on - strand at 5492.377 kb on + strand at 5492.414 kb on + strand, within HSERO_RS23955 at 5492.414 kb on + strand, within HSERO_RS23955 at 5492.469 kb on + strand, within HSERO_RS23955 at 5492.477 kb on - strand, within HSERO_RS23955 at 5492.483 kb on - strand, within HSERO_RS23955 at 5492.517 kb on + strand, within HSERO_RS23955 at 5492.610 kb on - strand, within HSERO_RS23955
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,490,870 - -0.0 5,490,870 - -0.5 5,491,143 - HSERO_RS23945 0.37 +0.1 5,491,181 + HSERO_RS23945 0.42 -0.8 5,491,327 - HSERO_RS23945 0.61 +0.4 5,491,500 - HSERO_RS23945 0.84 +1.4 5,491,539 - HSERO_RS23945 0.89 +0.1 5,491,679 + +0.5 5,492,076 + HSERO_RS23950 0.68 +0.9 5,492,122 - HSERO_RS23950 0.76 -0.3 5,492,221 - -0.4 5,492,366 - +1.0 5,492,377 + +0.4 5,492,414 + HSERO_RS23955 0.16 -0.6 5,492,414 + HSERO_RS23955 0.16 -0.3 5,492,469 + HSERO_RS23955 0.26 -0.8 5,492,477 - HSERO_RS23955 0.28 -0.3 5,492,483 - HSERO_RS23955 0.29 +0.8 5,492,517 + HSERO_RS23955 0.35 -0.6 5,492,610 - HSERO_RS23955 0.53 +0.4
Or see this region's nucleotide sequence