Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23645 and HSERO_RS23650 are separated by 12 nucleotides HSERO_RS23650 and HSERO_RS23655 overlap by 8 nucleotides HSERO_RS23655 and HSERO_RS23660 overlap by 4 nucleotides HSERO_RS23660 and HSERO_RS23665 are separated by 182 nucleotides
HSERO_RS23645: HSERO_RS23645 - glycerol-3-phosphate dehydrogenase, at 5,420,023 to 5,421,627
_RS23645
HSERO_RS23650: HSERO_RS23650 - phosphonate ABC transporter permease, at 5,421,640 to 5,422,473
_RS23650
HSERO_RS23655: HSERO_RS23655 - phosphonate ABC transporter permease, at 5,422,466 to 5,423,269
_RS23655
HSERO_RS23660: HSERO_RS23660 - phosphonate ABC transporter ATP-binding protein, at 5,423,266 to 5,424,036
_RS23660
HSERO_RS23665: HSERO_RS23665 - phosphonate ABC transporter substrate-binding protein, at 5,424,219 to 5,425,208
_RS23665
Position (kb) 5422
5423
5424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5421.480 kb on - strand at 5421.586 kb on - strand at 5421.777 kb on - strand, within HSERO_RS23650 at 5422.060 kb on - strand, within HSERO_RS23650 at 5422.285 kb on + strand, within HSERO_RS23650 at 5422.354 kb on - strand, within HSERO_RS23650 at 5422.393 kb on + strand at 5422.535 kb on + strand at 5422.635 kb on - strand, within HSERO_RS23655 at 5423.296 kb on - strand at 5423.386 kb on - strand, within HSERO_RS23660 at 5423.613 kb on + strand, within HSERO_RS23660 at 5423.629 kb on - strand, within HSERO_RS23660 at 5423.639 kb on - strand, within HSERO_RS23660 at 5423.703 kb on + strand, within HSERO_RS23660 at 5423.970 kb on + strand at 5424.034 kb on - strand at 5424.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,421,480 - +0.2 5,421,586 - -0.4 5,421,777 - HSERO_RS23650 0.16 -1.8 5,422,060 - HSERO_RS23650 0.50 -0.1 5,422,285 + HSERO_RS23650 0.77 -0.0 5,422,354 - HSERO_RS23650 0.86 +0.7 5,422,393 + -1.7 5,422,535 + +0.5 5,422,635 - HSERO_RS23655 0.21 -1.1 5,423,296 - -0.9 5,423,386 - HSERO_RS23660 0.16 -1.5 5,423,613 + HSERO_RS23660 0.45 -0.9 5,423,629 - HSERO_RS23660 0.47 +0.1 5,423,639 - HSERO_RS23660 0.48 +1.3 5,423,703 + HSERO_RS23660 0.57 -0.2 5,423,970 + -1.5 5,424,034 - +2.3 5,424,266 - -0.6
Or see this region's nucleotide sequence