Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22840 and HSERO_RS22845 are separated by 39 nucleotides HSERO_RS22845 and HSERO_RS22850 are separated by 291 nucleotides
HSERO_RS22840: HSERO_RS22840 - ornithine cyclodeaminase, at 5,242,230 to 5,243,150
_RS22840
HSERO_RS22845: HSERO_RS22845 - LysR family transcriptional regulator, at 5,243,190 to 5,244,122
_RS22845
HSERO_RS22850: HSERO_RS22850 - hypothetical protein, at 5,244,414 to 5,245,475
_RS22850
Position (kb) 5243
5244
5245 Strain fitness (log2 ratio) -1
0
1
2 at 5242.263 kb on + strand at 5242.400 kb on - strand, within HSERO_RS22840 at 5242.619 kb on - strand, within HSERO_RS22840 at 5242.880 kb on - strand, within HSERO_RS22840 at 5242.904 kb on + strand, within HSERO_RS22840 at 5242.951 kb on + strand, within HSERO_RS22840 at 5242.958 kb on - strand, within HSERO_RS22840 at 5243.051 kb on - strand, within HSERO_RS22840 at 5243.109 kb on + strand at 5243.636 kb on + strand, within HSERO_RS22845 at 5243.658 kb on - strand, within HSERO_RS22845 at 5243.736 kb on - strand, within HSERO_RS22845 at 5243.738 kb on - strand, within HSERO_RS22845 at 5243.810 kb on - strand, within HSERO_RS22845 at 5243.911 kb on - strand, within HSERO_RS22845 at 5243.952 kb on - strand, within HSERO_RS22845 at 5244.566 kb on + strand, within HSERO_RS22850 at 5244.680 kb on - strand, within HSERO_RS22850 at 5244.721 kb on + strand, within HSERO_RS22850 at 5244.734 kb on - strand, within HSERO_RS22850 at 5244.839 kb on - strand, within HSERO_RS22850 at 5244.874 kb on + strand, within HSERO_RS22850 at 5244.890 kb on + strand, within HSERO_RS22850 at 5244.900 kb on - strand, within HSERO_RS22850 at 5245.033 kb on + strand, within HSERO_RS22850 at 5245.033 kb on + strand, within HSERO_RS22850 at 5245.041 kb on - strand, within HSERO_RS22850 at 5245.041 kb on - strand, within HSERO_RS22850 at 5245.041 kb on - strand, within HSERO_RS22850 at 5245.091 kb on - strand, within HSERO_RS22850
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,242,263 + -0.9 5,242,400 - HSERO_RS22840 0.18 +0.3 5,242,619 - HSERO_RS22840 0.42 +0.1 5,242,880 - HSERO_RS22840 0.71 +0.3 5,242,904 + HSERO_RS22840 0.73 +0.2 5,242,951 + HSERO_RS22840 0.78 -0.2 5,242,958 - HSERO_RS22840 0.79 +1.1 5,243,051 - HSERO_RS22840 0.89 +0.1 5,243,109 + +0.9 5,243,636 + HSERO_RS22845 0.48 +0.1 5,243,658 - HSERO_RS22845 0.50 -1.6 5,243,736 - HSERO_RS22845 0.59 -1.2 5,243,738 - HSERO_RS22845 0.59 -0.1 5,243,810 - HSERO_RS22845 0.66 -0.2 5,243,911 - HSERO_RS22845 0.77 -1.6 5,243,952 - HSERO_RS22845 0.82 -0.8 5,244,566 + HSERO_RS22850 0.14 +1.5 5,244,680 - HSERO_RS22850 0.25 -1.0 5,244,721 + HSERO_RS22850 0.29 +0.1 5,244,734 - HSERO_RS22850 0.30 +0.1 5,244,839 - HSERO_RS22850 0.40 +0.9 5,244,874 + HSERO_RS22850 0.43 -0.1 5,244,890 + HSERO_RS22850 0.45 -0.6 5,244,900 - HSERO_RS22850 0.46 -0.1 5,245,033 + HSERO_RS22850 0.58 +0.0 5,245,033 + HSERO_RS22850 0.58 -0.7 5,245,041 - HSERO_RS22850 0.59 +0.5 5,245,041 - HSERO_RS22850 0.59 -0.5 5,245,041 - HSERO_RS22850 0.59 +2.1 5,245,091 - HSERO_RS22850 0.64 +0.6
Or see this region's nucleotide sequence