Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22590 and HSERO_RS22595 are separated by 272 nucleotides HSERO_RS22595 and HSERO_RS22600 are separated by 43 nucleotides HSERO_RS22600 and HSERO_RS22605 are separated by 72 nucleotides
HSERO_RS22590: HSERO_RS22590 - hydrolase, at 5,180,833 to 5,181,522
_RS22590
HSERO_RS22595: HSERO_RS22595 - ABC transporter substrate-binding protein, at 5,181,795 to 5,182,037
_RS22595
HSERO_RS22600: HSERO_RS22600 - transcriptional regulator, at 5,182,081 to 5,182,458
_RS22600
HSERO_RS22605: HSERO_RS22605 - histidine kinase, at 5,182,531 to 5,184,087
_RS22605
Position (kb) 5182
5183 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5181.102 kb on + strand, within HSERO_RS22590 at 5181.113 kb on + strand, within HSERO_RS22590 at 5181.266 kb on + strand, within HSERO_RS22590 at 5181.277 kb on + strand, within HSERO_RS22590 at 5181.399 kb on - strand, within HSERO_RS22590 at 5181.433 kb on + strand at 5181.433 kb on + strand, within HSERO_RS22590 at 5181.459 kb on + strand at 5181.467 kb on - strand at 5181.467 kb on - strand at 5181.472 kb on - strand at 5181.472 kb on - strand at 5181.497 kb on - strand at 5181.630 kb on - strand at 5181.665 kb on + strand at 5181.666 kb on + strand at 5181.778 kb on + strand at 5181.812 kb on - strand at 5181.818 kb on + strand at 5181.826 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.893 kb on + strand, within HSERO_RS22595 at 5181.972 kb on + strand, within HSERO_RS22595 at 5182.031 kb on + strand at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.425 kb on + strand at 5182.880 kb on + strand, within HSERO_RS22605 at 5182.968 kb on - strand, within HSERO_RS22605 at 5182.968 kb on - strand, within HSERO_RS22605 at 5183.247 kb on + strand, within HSERO_RS22605 at 5183.276 kb on - strand, within HSERO_RS22605
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,181,102 + HSERO_RS22590 0.39 -0.2 5,181,113 + HSERO_RS22590 0.41 -0.2 5,181,266 + HSERO_RS22590 0.63 -0.2 5,181,277 + HSERO_RS22590 0.64 -0.2 5,181,399 - HSERO_RS22590 0.82 -0.0 5,181,433 + +1.7 5,181,433 + HSERO_RS22590 0.87 -1.2 5,181,459 + +0.0 5,181,467 - +1.1 5,181,467 - +0.1 5,181,472 - -0.3 5,181,472 - -1.3 5,181,497 - +1.0 5,181,630 - -0.2 5,181,665 + -0.3 5,181,666 + -1.7 5,181,778 + +0.4 5,181,812 - -0.9 5,181,818 + +0.6 5,181,826 - HSERO_RS22595 0.13 +0.6 5,181,850 - HSERO_RS22595 0.23 +0.6 5,181,850 - HSERO_RS22595 0.23 +0.2 5,181,893 + HSERO_RS22595 0.40 +0.3 5,181,972 + HSERO_RS22595 0.73 -1.3 5,182,031 + -0.7 5,182,271 + HSERO_RS22600 0.50 -3.1 5,182,271 + HSERO_RS22600 0.50 -1.0 5,182,425 + +0.3 5,182,880 + HSERO_RS22605 0.22 +0.9 5,182,968 - HSERO_RS22605 0.28 -0.2 5,182,968 - HSERO_RS22605 0.28 +0.5 5,183,247 + HSERO_RS22605 0.46 +0.1 5,183,276 - HSERO_RS22605 0.48 +0.1
Or see this region's nucleotide sequence