Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21465 and HSERO_RS21470 are separated by 210 nucleotides HSERO_RS21470 and HSERO_RS21475 are separated by 52 nucleotides HSERO_RS21475 and HSERO_RS21480 are separated by 98 nucleotides HSERO_RS21480 and HSERO_RS21485 are separated by 13 nucleotides
HSERO_RS21465: HSERO_RS21465 - porin, at 4,914,412 to 4,915,575
_RS21465
HSERO_RS21470: HSERO_RS21470 - hypothetical protein, at 4,915,786 to 4,916,454
_RS21470
HSERO_RS21475: HSERO_RS21475 - recombinase XerC, at 4,916,507 to 4,917,487
_RS21475
HSERO_RS21480: HSERO_RS21480 - transcriptional regulator, at 4,917,586 to 4,918,167
_RS21480
HSERO_RS21485: HSERO_RS21485 - phosphoglycolate phosphatase, at 4,918,181 to 4,918,918
_RS21485
Position (kb) 4916
4917
4918 Strain fitness (log2 ratio) -1
0
1
2
3 at 4915.810 kb on - strand at 4915.981 kb on - strand, within HSERO_RS21470 at 4916.365 kb on - strand, within HSERO_RS21470 at 4916.431 kb on + strand at 4916.982 kb on + strand, within HSERO_RS21475 at 4917.051 kb on + strand, within HSERO_RS21475 at 4917.162 kb on + strand, within HSERO_RS21475 at 4917.484 kb on + strand at 4917.521 kb on - strand at 4917.528 kb on + strand at 4917.550 kb on + strand at 4917.550 kb on + strand at 4917.558 kb on - strand at 4917.558 kb on - strand at 4917.587 kb on - strand at 4917.793 kb on + strand, within HSERO_RS21480 at 4918.093 kb on + strand, within HSERO_RS21480 at 4918.185 kb on - strand at 4918.230 kb on + strand at 4918.318 kb on + strand, within HSERO_RS21485 at 4918.362 kb on + strand, within HSERO_RS21485
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 4,915,810 - +3.4 4,915,981 - HSERO_RS21470 0.29 +1.2 4,916,365 - HSERO_RS21470 0.87 +0.3 4,916,431 + +1.1 4,916,982 + HSERO_RS21475 0.48 -0.5 4,917,051 + HSERO_RS21475 0.55 +1.2 4,917,162 + HSERO_RS21475 0.67 +0.1 4,917,484 + +0.2 4,917,521 - +0.3 4,917,528 + +1.0 4,917,550 + -0.0 4,917,550 + -0.8 4,917,558 - +0.5 4,917,558 - -0.8 4,917,587 - +0.0 4,917,793 + HSERO_RS21480 0.36 +1.2 4,918,093 + HSERO_RS21480 0.87 +0.5 4,918,185 - +1.3 4,918,230 + -0.5 4,918,318 + HSERO_RS21485 0.19 +1.5 4,918,362 + HSERO_RS21485 0.25 -0.7
Or see this region's nucleotide sequence