Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21230

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,861,216	-		HSERO_RS21225	0.89	+0.4
4,861,232	+		HSERO_RS21225	0.90	+0.2
4,861,240	+				-0.9
4,861,296	+				-0.9
4,861,464	+				-0.1
4,861,464	-				-1.3
4,861,685	-				-0.8
4,861,786	-				+0.7
4,861,786	-				+0.1
4,861,787	+				-0.2
4,861,795	-				+0.3
4,861,852	+				+0.1
4,861,892	-				+0.6
4,862,024	-				-0.4
4,862,034	-				-0.2
4,862,098	-				-0.9
4,862,125	+				-0.6
4,862,196	+		HSERO_RS21230	0.11	-1.1
4,862,234	+		HSERO_RS21230	0.16	+0.0
4,862,265	+		HSERO_RS21230	0.20	-1.6
4,862,518	+		HSERO_RS21230	0.54	-0.4
4,862,933	-				+0.2
4,862,947	+				+0.0
4,863,117	-		HSERO_RS21235	0.25	+1.2
4,863,161	+		HSERO_RS21235	0.31	+0.8
4,863,167	-		HSERO_RS21235	0.31	+0.4
4,863,301	+		HSERO_RS21235	0.48	+0.3
4,863,325	+		HSERO_RS21235	0.51	+0.2
4,863,351	+		HSERO_RS21235	0.55	-0.1
4,863,376	+		HSERO_RS21235	0.58	-0.0
4,863,376	+		HSERO_RS21235	0.58	+0.4
4,863,394	-		HSERO_RS21235	0.60	-0.1
4,863,605	+		HSERO_RS21235	0.87	+0.5