Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21200

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,848,995	+		HSERO_RS21195	0.50	+0.6
4,849,084	-		HSERO_RS21195	0.56	-0.1
4,849,089	-		HSERO_RS21195	0.56	-0.6
4,849,177	-		HSERO_RS21195	0.63	+0.5
4,849,186	+		HSERO_RS21195	0.63	-0.1
4,849,212	-		HSERO_RS21195	0.65	-1.2
4,849,230	-		HSERO_RS21195	0.67	-1.4
4,849,302	-				+0.0
4,849,533	+		HSERO_RS21195	0.89	-0.1
4,849,541	-		HSERO_RS21195	0.89	-0.9
4,849,595	-				+0.2
4,849,636	-				-1.1
4,849,708	+				-0.8
4,849,708	+				+0.4
4,849,748	-				-1.0
4,849,788	-				+0.3
4,849,788	-				-0.0
4,849,865	+				-0.7
4,849,975	-		HSERO_RS21200	0.14	-0.6
4,850,157	+		HSERO_RS21200	0.26	-1.7
4,850,182	+		HSERO_RS21200	0.28	-1.3
4,850,450	+		HSERO_RS21200	0.46	-1.3
4,850,594	+		HSERO_RS21200	0.55	-0.3
4,850,602	-		HSERO_RS21200	0.56	-1.7
4,850,649	+		HSERO_RS21200	0.59	-1.0
4,850,761	+		HSERO_RS21200	0.67	-0.6
4,850,812	+		HSERO_RS21200	0.70	-0.6
4,851,028	-		HSERO_RS21200	0.84	-1.1
4,851,136	-				-0.7
4,851,208	+				+0.1
4,851,299	-				+0.1
4,851,309	-				-0.7
4,851,355	+				-0.0
4,851,784	+		HSERO_RS21205	0.43	+0.3
4,851,791	-		HSERO_RS21205	0.44	-0.9
4,851,792	-		HSERO_RS21205	0.44	+0.8
4,851,894	-		HSERO_RS21205	0.54	-2.0
4,851,978	-		HSERO_RS21205	0.62	-0.2
4,851,992	-		HSERO_RS21205	0.63	-0.3
4,852,048	-		HSERO_RS21205	0.69	+0.1
4,852,056	+		HSERO_RS21205	0.70	+1.8
4,852,104	-		HSERO_RS21205	0.74	-0.8
4,852,109	-		HSERO_RS21205	0.75	-1.2