Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20920

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,785,714	-		HSERO_RS20915	0.67	-0.6
4,785,846	+		HSERO_RS20915	0.73	-0.3
4,785,854	-		HSERO_RS20915	0.73	-0.2
4,785,878	-		HSERO_RS20915	0.75	+1.0
4,785,952	+				+0.2
4,786,084	-		HSERO_RS20915	0.85	-0.4
4,786,131	+		HSERO_RS20915	0.87	+0.6
4,786,230	+				-0.9
4,786,230	+				+1.0
4,786,298	+				-1.6
4,786,327	+				-0.3
4,786,350	+				+0.1
4,786,350	+				-0.1
4,786,358	-				+0.2
4,786,381	+				-1.1
4,786,473	-				+0.2
4,786,523	-				-1.4
4,786,605	+				-2.1
4,786,629	-				-2.3
4,786,651	+				-0.7
4,786,812	-		HSERO_RS20920	0.12	-2.6
4,786,846	-		HSERO_RS20920	0.14	+0.8
4,787,077	-		HSERO_RS20920	0.27	-2.6
4,787,174	-		HSERO_RS20920	0.32	+0.8
4,787,334	+		HSERO_RS20920	0.41	-1.4
4,787,392	+		HSERO_RS20920	0.45	-0.5
4,787,430	+		HSERO_RS20920	0.47	-1.8
4,787,535	-		HSERO_RS20920	0.53	-0.8
4,787,807	+		HSERO_RS20920	0.68	-2.4
4,787,939	+		HSERO_RS20920	0.75	-2.8
4,787,947	-		HSERO_RS20920	0.76	-2.1
4,788,073	-		HSERO_RS20920	0.83	-0.9
4,788,240	+				+0.6
4,788,248	-				-4.0
4,788,248	-				-0.1
4,788,276	-				-1.3
4,788,383	+				+3.4
4,788,710	-		HSERO_RS20925	0.28	-0.3
4,788,806	+		HSERO_RS20925	0.37	+0.0
4,788,814	-		HSERO_RS20925	0.37	+0.2
4,788,932	+		HSERO_RS20925	0.48	-0.3
4,789,022	-		HSERO_RS20925	0.55	-0.4
4,789,160	+		HSERO_RS20925	0.67	+0.2
4,789,160	+		HSERO_RS20925	0.67	+0.1
4,789,235	-		HSERO_RS20925	0.74	-0.3