Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20195 and HSERO_RS20200 overlap by 4 nucleotides HSERO_RS20200 and HSERO_RS20205 are separated by 295 nucleotides
HSERO_RS20195: HSERO_RS20195 - type VI secretion protein, at 4,636,735 to 4,638,081
_RS20195
HSERO_RS20200: HSERO_RS20200 - type VI secretion system protein ImpK, at 4,638,078 to 4,638,857
_RS20200
HSERO_RS20205: HSERO_RS20205 - membrane protein, at 4,639,153 to 4,640,658
_RS20205
Position (kb) 4638
4639 Strain fitness (log2 ratio) -1
0
1
2
3 at 4637.211 kb on - strand, within HSERO_RS20195 at 4637.230 kb on - strand, within HSERO_RS20195 at 4637.258 kb on + strand, within HSERO_RS20195 at 4637.259 kb on + strand, within HSERO_RS20195 at 4637.267 kb on - strand, within HSERO_RS20195 at 4637.351 kb on + strand, within HSERO_RS20195 at 4637.386 kb on + strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.471 kb on - strand, within HSERO_RS20195 at 4637.505 kb on + strand, within HSERO_RS20195 at 4637.593 kb on - strand, within HSERO_RS20195 at 4637.726 kb on - strand, within HSERO_RS20195 at 4637.763 kb on - strand, within HSERO_RS20195 at 4637.900 kb on - strand, within HSERO_RS20195 at 4638.031 kb on - strand at 4638.206 kb on - strand, within HSERO_RS20200 at 4638.276 kb on + strand at 4638.296 kb on + strand, within HSERO_RS20200 at 4638.428 kb on - strand, within HSERO_RS20200 at 4638.437 kb on + strand, within HSERO_RS20200 at 4638.691 kb on - strand, within HSERO_RS20200 at 4638.745 kb on + strand, within HSERO_RS20200 at 4638.765 kb on - strand, within HSERO_RS20200 at 4638.846 kb on + strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.859 kb on - strand at 4638.859 kb on - strand at 4639.184 kb on + strand at 4639.184 kb on + strand at 4639.218 kb on + strand at 4639.300 kb on - strand at 4639.352 kb on - strand, within HSERO_RS20205 at 4639.353 kb on + strand, within HSERO_RS20205 at 4639.387 kb on - strand, within HSERO_RS20205 at 4639.387 kb on - strand, within HSERO_RS20205 at 4639.443 kb on + strand, within HSERO_RS20205 at 4639.443 kb on + strand, within HSERO_RS20205 at 4639.477 kb on + strand, within HSERO_RS20205 at 4639.649 kb on - strand, within HSERO_RS20205 at 4639.649 kb on - strand, within HSERO_RS20205 at 4639.699 kb on + strand, within HSERO_RS20205 at 4639.738 kb on - strand, within HSERO_RS20205 at 4639.787 kb on + strand, within HSERO_RS20205
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 4,637,211 - HSERO_RS20195 0.35 -1.6 4,637,230 - HSERO_RS20195 0.37 -0.6 4,637,258 + HSERO_RS20195 0.39 -0.6 4,637,259 + HSERO_RS20195 0.39 -0.6 4,637,267 - HSERO_RS20195 0.39 +2.8 4,637,351 + HSERO_RS20195 0.46 -0.2 4,637,386 + HSERO_RS20195 0.48 -0.6 4,637,394 - HSERO_RS20195 0.49 +0.6 4,637,394 - HSERO_RS20195 0.49 -1.6 4,637,394 - HSERO_RS20195 0.49 +0.8 4,637,394 - HSERO_RS20195 0.49 +0.1 4,637,394 - HSERO_RS20195 0.49 +0.8 4,637,471 - HSERO_RS20195 0.55 -1.1 4,637,505 + HSERO_RS20195 0.57 +1.8 4,637,593 - HSERO_RS20195 0.64 +0.6 4,637,726 - HSERO_RS20195 0.74 -1.5 4,637,763 - HSERO_RS20195 0.76 +0.2 4,637,900 - HSERO_RS20195 0.86 +2.8 4,638,031 - -1.0 4,638,206 - HSERO_RS20200 0.16 +0.5 4,638,276 + +1.2 4,638,296 + HSERO_RS20200 0.28 -0.0 4,638,428 - HSERO_RS20200 0.45 -0.8 4,638,437 + HSERO_RS20200 0.46 -1.6 4,638,691 - HSERO_RS20200 0.79 +0.0 4,638,745 + HSERO_RS20200 0.86 -0.3 4,638,765 - HSERO_RS20200 0.88 -0.4 4,638,846 + +1.4 4,638,854 - +0.1 4,638,854 - -0.2 4,638,854 - +0.0 4,638,854 - +0.3 4,638,859 - -0.3 4,638,859 - -0.2 4,639,184 + -0.4 4,639,184 + -0.3 4,639,218 + +0.1 4,639,300 - +0.5 4,639,352 - HSERO_RS20205 0.13 +1.1 4,639,353 + HSERO_RS20205 0.13 +0.5 4,639,387 - HSERO_RS20205 0.16 +0.2 4,639,387 - HSERO_RS20205 0.16 +0.3 4,639,443 + HSERO_RS20205 0.19 +0.0 4,639,443 + HSERO_RS20205 0.19 -0.2 4,639,477 + HSERO_RS20205 0.22 -1.3 4,639,649 - HSERO_RS20205 0.33 -0.6 4,639,649 - HSERO_RS20205 0.33 -0.6 4,639,699 + HSERO_RS20205 0.36 +0.7 4,639,738 - HSERO_RS20205 0.39 -1.0 4,639,787 + HSERO_RS20205 0.42 +0.3
Or see this region's nucleotide sequence