Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19835

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19830 and HSERO_RS19835 overlap by 1 nucleotidesHSERO_RS19835 and HSERO_RS19840 overlap by 4 nucleotidesHSERO_RS19840 and HSERO_RS19845 are separated by 69 nucleotides HSERO_RS19830: HSERO_RS19830 - sugar phosphate isomerase, at 4,554,244 to 4,555,272 _RS19830 HSERO_RS19835: HSERO_RS19835 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,555,272 to 4,555,826 _RS19835 HSERO_RS19840: HSERO_RS19840 - membrane protein, at 4,555,823 to 4,556,431 _RS19840 HSERO_RS19845: HSERO_RS19845 - ABC transporter substrate-binding protein, at 4,556,501 to 4,557,106 _RS19845 Position (kb) 4555 4556Strain fitness (log2 ratio) -1 0 1at 4555.241 kb on + strandat 4555.382 kb on + strand, within HSERO_RS19835at 4555.382 kb on + strand, within HSERO_RS19835at 4555.541 kb on + strand, within HSERO_RS19835at 4555.633 kb on + strand, within HSERO_RS19835at 4555.701 kb on + strand, within HSERO_RS19835at 4556.321 kb on + strand, within HSERO_RS19840at 4556.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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4,555,241 + -1.6
4,555,382 + HSERO_RS19835 0.20 -0.3
4,555,382 + HSERO_RS19835 0.20 -0.6
4,555,541 + HSERO_RS19835 0.48 -0.8
4,555,633 + HSERO_RS19835 0.65 -0.9
4,555,701 + HSERO_RS19835 0.77 -1.5
4,556,321 + HSERO_RS19840 0.82 -1.4
4,556,403 + +1.3

Or see this region's nucleotide sequence