Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19775 and HSERO_RS19780 are separated by 120 nucleotides HSERO_RS19780 and HSERO_RS19785 are separated by 10 nucleotides HSERO_RS19785 and HSERO_RS19790 are separated by 165 nucleotides
HSERO_RS19775: HSERO_RS19775 - acriflavine resistance protein B, at 4,535,647 to 4,538,748
_RS19775
HSERO_RS19780: HSERO_RS19780 - chemotaxis protein CheY, at 4,538,869 to 4,539,666
_RS19780
HSERO_RS19785: HSERO_RS19785 - sensor histidine kinase, at 4,539,677 to 4,540,762
_RS19785
HSERO_RS19790: HSERO_RS19790 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,540,928 to 4,542,046
_RS19790
Position (kb) 4539
4540
4541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4538.713 kb on + strand at 4538.813 kb on + strand at 4538.831 kb on + strand at 4539.051 kb on - strand, within HSERO_RS19780 at 4539.141 kb on + strand, within HSERO_RS19780 at 4539.251 kb on + strand, within HSERO_RS19780 at 4539.282 kb on - strand, within HSERO_RS19780 at 4539.311 kb on - strand, within HSERO_RS19780 at 4539.311 kb on - strand, within HSERO_RS19780 at 4539.313 kb on + strand, within HSERO_RS19780 at 4539.396 kb on + strand, within HSERO_RS19780 at 4539.417 kb on - strand, within HSERO_RS19780 at 4539.436 kb on - strand, within HSERO_RS19780 at 4539.439 kb on + strand at 4539.598 kb on + strand at 4539.619 kb on + strand at 4539.837 kb on - strand, within HSERO_RS19785 at 4539.902 kb on + strand, within HSERO_RS19785 at 4540.087 kb on + strand, within HSERO_RS19785 at 4540.142 kb on - strand, within HSERO_RS19785 at 4540.331 kb on - strand, within HSERO_RS19785 at 4540.362 kb on - strand, within HSERO_RS19785 at 4540.400 kb on + strand, within HSERO_RS19785 at 4540.465 kb on - strand, within HSERO_RS19785 at 4540.556 kb on - strand, within HSERO_RS19785 at 4540.825 kb on - strand at 4540.964 kb on - strand at 4540.995 kb on - strand at 4541.012 kb on - strand at 4541.098 kb on - strand, within HSERO_RS19790 at 4541.105 kb on - strand, within HSERO_RS19790 at 4541.304 kb on - strand, within HSERO_RS19790 at 4541.422 kb on - strand, within HSERO_RS19790 at 4541.422 kb on - strand, within HSERO_RS19790 at 4541.523 kb on - strand, within HSERO_RS19790 at 4541.757 kb on + strand, within HSERO_RS19790
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 4,538,713 + -1.2 4,538,813 + -0.0 4,538,831 + -2.3 4,539,051 - HSERO_RS19780 0.23 -0.2 4,539,141 + HSERO_RS19780 0.34 +0.0 4,539,251 + HSERO_RS19780 0.48 -0.9 4,539,282 - HSERO_RS19780 0.52 +0.9 4,539,311 - HSERO_RS19780 0.55 +0.8 4,539,311 - HSERO_RS19780 0.55 +0.4 4,539,313 + HSERO_RS19780 0.56 -0.5 4,539,396 + HSERO_RS19780 0.66 +0.1 4,539,417 - HSERO_RS19780 0.69 +0.1 4,539,436 - HSERO_RS19780 0.71 -1.4 4,539,439 + +1.1 4,539,598 + -0.1 4,539,619 + +1.1 4,539,837 - HSERO_RS19785 0.15 -0.1 4,539,902 + HSERO_RS19785 0.21 -1.3 4,540,087 + HSERO_RS19785 0.38 +0.5 4,540,142 - HSERO_RS19785 0.43 -1.0 4,540,331 - HSERO_RS19785 0.60 -0.3 4,540,362 - HSERO_RS19785 0.63 -0.9 4,540,400 + HSERO_RS19785 0.67 -0.3 4,540,465 - HSERO_RS19785 0.73 -0.9 4,540,556 - HSERO_RS19785 0.81 -1.4 4,540,825 - +0.6 4,540,964 - +0.2 4,540,995 - +2.9 4,541,012 - +1.4 4,541,098 - HSERO_RS19790 0.15 -1.0 4,541,105 - HSERO_RS19790 0.16 -0.5 4,541,304 - HSERO_RS19790 0.34 -0.1 4,541,422 - HSERO_RS19790 0.44 +0.8 4,541,422 - HSERO_RS19790 0.44 +1.0 4,541,523 - HSERO_RS19790 0.53 +0.1 4,541,757 + HSERO_RS19790 0.74 -0.5
Or see this region's nucleotide sequence