Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19590

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,488,630	-		HSERO_RS19585	0.57	+0.4
4,488,754	-		HSERO_RS19585	0.64	+0.4
4,488,830	+		HSERO_RS19585	0.68	-0.6
4,488,845	-		HSERO_RS19585	0.69	-1.8
4,489,013	+		HSERO_RS19585	0.79	-0.3
4,489,031	-		HSERO_RS19585	0.80	-2.3
4,489,122	-		HSERO_RS19585	0.85	-0.4
4,489,299	-				-0.2
4,489,436	+				+0.7
4,489,436	+				-0.1
4,489,459	-				+0.7
4,489,779	+		HSERO_RS19590	0.11	+0.1
4,490,705	-		HSERO_RS19590	0.74	-0.3
4,491,130	-				-0.2
4,491,599	+				+0.1
4,491,632	+				-1.0
4,491,694	+		HSERO_RS19595	0.11	+0.1
4,491,731	+		HSERO_RS19595	0.12	+1.1
4,491,846	+		HSERO_RS19595	0.14	+0.5
4,491,854	-		HSERO_RS19595	0.14	-1.0
4,492,046	+		HSERO_RS19595	0.18	-0.3
4,492,046	+		HSERO_RS19595	0.18	+0.2
4,492,046	+		HSERO_RS19595	0.18	-0.4
4,492,054	-		HSERO_RS19595	0.18	-1.0
4,492,054	-		HSERO_RS19595	0.18	-1.8
4,492,054	-		HSERO_RS19595	0.18	-1.6