Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19445

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,455,211	-		HSERO_RS19435	0.79	-1.9
4,455,221	-		HSERO_RS19435	0.79	-1.1
4,455,251	+		HSERO_RS19435	0.81	-0.2
4,455,284	+		HSERO_RS19435	0.83	+0.7
4,455,292	-		HSERO_RS19435	0.84	-0.9
4,455,476	+				-0.9
4,455,491	+				-2.0
4,455,499	-				-1.2
4,456,096	+				+0.2
4,456,168	+				-2.5
4,456,178	-				-0.2
4,456,272	-		HSERO_RS19445	0.13	-2.2
4,456,360	+		HSERO_RS19445	0.22	-2.2
4,456,368	-		HSERO_RS19445	0.23	-1.6
4,456,468	+		HSERO_RS19445	0.32	-1.3
4,456,625	-		HSERO_RS19445	0.47	-3.2
4,456,683	+		HSERO_RS19445	0.53	-1.6
4,456,813	+		HSERO_RS19445	0.65	-2.7
4,457,050	+		HSERO_RS19445	0.88	-1.8
4,457,081	-				-2.1
4,457,168	-				-1.7
4,457,173	-				-1.1
4,457,173	-				-0.9
4,457,244	+				-3.9
4,457,429	-		HSERO_RS19450	0.27	-2.4
4,457,834	+		HSERO_RS19450	0.77	-1.9
4,457,983	-				-0.3
4,458,045	+				+0.6