Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19435

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,453,308	+		HSERO_RS19430	0.42	-0.3
4,453,316	-		HSERO_RS19430	0.44	-0.6
4,453,326	-		HSERO_RS19430	0.45	-0.1
4,453,363	-		HSERO_RS19430	0.51	-0.4
4,453,393	-		HSERO_RS19430	0.55	+0.8
4,453,408	+				-0.6
4,453,410	+		HSERO_RS19430	0.57	+0.1
4,453,418	-		HSERO_RS19430	0.59	+1.9
4,453,497	-		HSERO_RS19430	0.70	-0.0
4,453,625	+		HSERO_RS19430	0.89	-0.4
4,453,650	+				-0.2
4,453,650	+				+0.2
4,453,805	-				-0.1
4,454,112	+				-0.1
4,454,135	+				-0.6
4,454,143	-				-3.0
4,454,143	-				-1.5
4,454,143	-				-2.3
4,454,199	-		HSERO_RS19435	0.11	-1.2
4,454,279	-		HSERO_RS19435	0.16	-0.4
4,454,473	-		HSERO_RS19435	0.29	-1.0
4,454,475	+		HSERO_RS19435	0.29	-2.4
4,454,582	-		HSERO_RS19435	0.37	-1.1
4,454,809	+		HSERO_RS19435	0.52	-1.6
4,455,211	-		HSERO_RS19435	0.79	-1.9
4,455,221	-		HSERO_RS19435	0.79	-1.1
4,455,251	+		HSERO_RS19435	0.81	-0.2
4,455,284	+		HSERO_RS19435	0.83	+0.7
4,455,292	-		HSERO_RS19435	0.84	-0.9
4,455,476	+				-0.9
4,455,491	+				-2.0
4,455,499	-				-1.2
4,456,096	+				+0.2
4,456,168	+				-2.5
4,456,178	-				-0.2
4,456,272	-		HSERO_RS19445	0.13	-2.2
4,456,360	+		HSERO_RS19445	0.22	-2.2
4,456,368	-		HSERO_RS19445	0.23	-1.6
4,456,468	+		HSERO_RS19445	0.32	-1.3