Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18010

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18000 and HSERO_RS18005 overlap by 4 nucleotidesHSERO_RS18005 and HSERO_RS18010 are separated by 395 nucleotidesHSERO_RS18010 and HSERO_RS18015 overlap by 14 nucleotides HSERO_RS18000: HSERO_RS18000 - transcription termination factor NusA, at 4,134,435 to 4,135,994 _RS18000 HSERO_RS18005: HSERO_RS18005 - ribosome maturation protein RimP, at 4,135,991 to 4,136,485 _RS18005 HSERO_RS18010: HSERO_RS18010 - pseudouridine synthase, at 4,136,881 to 4,138,908 _RS18010 HSERO_RS18015: HSERO_RS18015 - transcriptional regulator, at 4,138,895 to 4,139,959 _RS18015 Position (kb) 4136 4137 4138 4139Strain fitness (log2 ratio) -1 0 1at 4136.014 kb on - strandat 4136.468 kb on - strandat 4136.707 kb on + strandat 4136.715 kb on - strandat 4138.227 kb on - strand, within HSERO_RS18010at 4139.259 kb on - strand, within HSERO_RS18015at 4139.269 kb on - strand, within HSERO_RS18015at 4139.338 kb on - strand, within HSERO_RS18015at 4139.463 kb on + strand, within HSERO_RS18015

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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4,136,014 - +0.1
4,136,468 - -0.8
4,136,707 + +0.5
4,136,715 - +0.4
4,138,227 - HSERO_RS18010 0.66 -1.7
4,139,259 - HSERO_RS18015 0.34 -0.7
4,139,269 - HSERO_RS18015 0.35 -0.2
4,139,338 - HSERO_RS18015 0.42 +0.8
4,139,463 + HSERO_RS18015 0.53 +0.0

Or see this region's nucleotide sequence