Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17980

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,126,984	+				-1.6
4,127,003	+				-0.1
4,127,013	+				-0.6
4,127,021	-				-0.5
4,127,021	-				-0.9
4,127,111	-				-0.5
4,127,119	+				+0.1
4,127,127	-				-0.9
4,127,238	-				-0.1
4,127,247	+				+0.9
4,127,374	+				+0.1
4,127,389	+				-1.5
4,127,477	-				-0.7
4,127,477	-				-0.2
4,127,594	-				-0.9
4,127,841	-				+0.3
4,128,380	+		HSERO_RS17980	0.27	-1.6
4,128,931	+		HSERO_RS17980	0.57	+1.3
4,129,073	+		HSERO_RS17980	0.65	+2.3
4,129,167	-		HSERO_RS17980	0.70	-0.3
4,129,916	-				+0.7
4,130,220	-		HSERO_RS17985	0.34	-1.4
4,130,220	-		HSERO_RS17985	0.34	+0.5
4,130,240	-		HSERO_RS17985	0.36	+0.0
4,130,397	+		HSERO_RS17985	0.51	+0.4
4,130,426	-		HSERO_RS17985	0.54	+0.7
4,130,487	-		HSERO_RS17985	0.60	-1.3
4,130,528	+		HSERO_RS17985	0.64	+1.3
4,130,637	-		HSERO_RS17985	0.75	+0.7
4,130,663	+		HSERO_RS17985	0.78	+0.9