Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17890 and HSERO_RS17895 are separated by 117 nucleotides HSERO_RS17895 and HSERO_RS17900 are separated by 57 nucleotides HSERO_RS17900 and HSERO_RS17905 are separated by 75 nucleotides
HSERO_RS17890: HSERO_RS17890 - transcription antitermination protein NusB, at 4,113,484 to 4,113,954
_RS17890
HSERO_RS17895: HSERO_RS17895 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,114,072 to 4,114,557
_RS17895
HSERO_RS17900: HSERO_RS17900 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 4,114,615 to 4,115,736
_RS17900
HSERO_RS17905: HSERO_RS17905 - tRNA-dihydrouridine synthase A, at 4,115,812 to 4,116,858
_RS17905
Position (kb) 4114
4115
4116 Strain fitness (log2 ratio) -1
0
1
2 at 4114.560 kb on - strand at 4114.900 kb on + strand, within HSERO_RS17900 at 4114.906 kb on - strand, within HSERO_RS17900 at 4115.328 kb on - strand, within HSERO_RS17900 at 4115.822 kb on + strand at 4115.868 kb on + strand at 4116.039 kb on - strand, within HSERO_RS17905 at 4116.087 kb on - strand, within HSERO_RS17905 at 4116.119 kb on + strand, within HSERO_RS17905 at 4116.127 kb on - strand, within HSERO_RS17905 at 4116.264 kb on - strand, within HSERO_RS17905 at 4116.397 kb on + strand, within HSERO_RS17905 at 4116.398 kb on + strand, within HSERO_RS17905 at 4116.450 kb on + strand, within HSERO_RS17905 at 4116.472 kb on - strand, within HSERO_RS17905 at 4116.553 kb on + strand, within HSERO_RS17905 at 4116.599 kb on - strand, within HSERO_RS17905 at 4116.660 kb on - strand, within HSERO_RS17905 at 4116.686 kb on + strand, within HSERO_RS17905
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 4,114,560 - +0.1 4,114,900 + HSERO_RS17900 0.25 +1.9 4,114,906 - HSERO_RS17900 0.26 -0.5 4,115,328 - HSERO_RS17900 0.64 -0.5 4,115,822 + +0.5 4,115,868 + +0.9 4,116,039 - HSERO_RS17905 0.22 -0.1 4,116,087 - HSERO_RS17905 0.26 -0.1 4,116,119 + HSERO_RS17905 0.29 +0.4 4,116,127 - HSERO_RS17905 0.30 -0.1 4,116,264 - HSERO_RS17905 0.43 +2.0 4,116,397 + HSERO_RS17905 0.56 -0.5 4,116,398 + HSERO_RS17905 0.56 +0.1 4,116,450 + HSERO_RS17905 0.61 +0.0 4,116,472 - HSERO_RS17905 0.63 +0.5 4,116,553 + HSERO_RS17905 0.71 -0.1 4,116,599 - HSERO_RS17905 0.75 +0.2 4,116,660 - HSERO_RS17905 0.81 +0.4 4,116,686 + HSERO_RS17905 0.83 -0.2
Or see this region's nucleotide sequence