Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16480

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,770,887	+		HSERO_RS16475	0.26	-1.3
3,771,505	-		HSERO_RS16475	0.75	-1.8
3,772,242	+		HSERO_RS16480	0.58	-1.1
3,772,244	+		HSERO_RS16480	0.59	-3.9
3,772,244	+		HSERO_RS16480	0.59	-3.4
3,772,293	+				-0.3
3,772,762	+		HSERO_RS16485	0.24	+0.4
3,773,012	-		HSERO_RS16485	0.51	-1.1
3,773,045	+		HSERO_RS16485	0.55	+0.9
3,773,082	-		HSERO_RS16485	0.59	+0.9
3,773,182	-		HSERO_RS16485	0.70	+0.6
3,773,303	-		HSERO_RS16485	0.84	+1.4
3,773,423	-				+0.5
3,773,423	-				-0.8
3,773,491	-				-1.3