Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16475

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,769,726	+				-1.5
3,769,747	-				-2.9
3,769,848	+		HSERO_RS16470	0.20	-2.5
3,770,049	-		HSERO_RS16470	0.45	-2.0
3,770,056	-		HSERO_RS16470	0.46	+0.7
3,770,247	+		HSERO_RS16470	0.70	-2.3
3,770,426	-				-2.1
3,770,558	-				+0.7
3,770,592	-				+3.0
3,770,639	-				-1.3
3,770,685	-				-2.0
3,770,887	+		HSERO_RS16475	0.26	-1.3
3,771,505	-		HSERO_RS16475	0.75	-1.8
3,772,242	+		HSERO_RS16480	0.58	-1.1
3,772,244	+		HSERO_RS16480	0.59	-3.9
3,772,244	+		HSERO_RS16480	0.59	-3.4
3,772,293	+				-0.3
3,772,762	+		HSERO_RS16485	0.24	+0.4