Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16075

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,668,717	+				+1.6
3,669,011	-		HSERO_RS16070	0.20	-0.0
3,669,355	+		HSERO_RS16070	0.61	+3.0
3,669,363	-		HSERO_RS16070	0.62	-0.2
3,669,982	+		HSERO_RS16075	0.19	+0.4
3,670,361	-		HSERO_RS16075	0.45	+1.4
3,670,382	+		HSERO_RS16075	0.47	+0.2
3,670,472	+		HSERO_RS16075	0.53	+1.4
3,670,595	+		HSERO_RS16075	0.61	+3.0
3,671,074	+				+1.4
3,671,094	+				+2.0
3,671,169	-				+1.4
3,671,524	+				+0.5
3,671,711	-		HSERO_RS16080	0.18	+0.8
3,671,763	-				+0.7
3,671,845	+		HSERO_RS16080	0.43	+0.6
3,671,924	-		HSERO_RS16080	0.57	-2.0
3,671,928	-		HSERO_RS16080	0.58	-0.6
3,671,932	+				+2.6
3,671,935	-		HSERO_RS16080	0.59	+0.5
3,671,964	-		HSERO_RS16080	0.64	+0.8
3,672,041	+		HSERO_RS16080	0.78	+0.2
3,672,135	+				-2.0
3,672,140	+				-1.2
3,672,147	-				+0.3
3,672,154	+				+1.2