Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS16040 and HSERO_RS16045 overlap by 8 nucleotides HSERO_RS16045 and HSERO_RS16050 are separated by 4 nucleotides HSERO_RS16050 and HSERO_RS16055 are separated by 13 nucleotides HSERO_RS16055 and HSERO_RS16060 are separated by 144 nucleotides HSERO_RS16060 and HSERO_RS16065 overlap by 1 nucleotides
HSERO_RS16040: HSERO_RS16040 - cytochrome CBB3, at 3,662,818 to 3,663,750
_RS16040
HSERO_RS16045: HSERO_RS16045 - cytochrome oxidase, at 3,663,743 to 3,663,937
_RS16045
HSERO_RS16050: HSERO_RS16050 - peptidase S41, at 3,663,942 to 3,664,556
_RS16050
HSERO_RS16055: HSERO_RS16055 - cytochrome oxidase subunit I, at 3,664,570 to 3,665,997
_RS16055
HSERO_RS16060: HSERO_RS16060 - cytochrome oxidase maturation protein Cbb3, at 3,666,142 to 3,666,315
_RS16060
HSERO_RS16065: HSERO_RS16065 - cation transporter, at 3,666,315 to 3,668,834
_RS16065
Position (kb)
3664
3665
3666 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3663.601 kb on - strand, within HSERO_RS16040 at 3663.624 kb on + strand, within HSERO_RS16040 at 3663.766 kb on - strand, within HSERO_RS16045 at 3663.835 kb on - strand, within HSERO_RS16045 at 3664.086 kb on - strand, within HSERO_RS16050 at 3664.110 kb on - strand, within HSERO_RS16050 at 3664.403 kb on - strand, within HSERO_RS16050 at 3664.588 kb on - strand at 3664.614 kb on + strand at 3664.744 kb on + strand, within HSERO_RS16055 at 3664.745 kb on - strand, within HSERO_RS16055 at 3664.776 kb on + strand, within HSERO_RS16055 at 3664.988 kb on + strand, within HSERO_RS16055 at 3664.996 kb on - strand, within HSERO_RS16055 at 3665.103 kb on + strand, within HSERO_RS16055 at 3665.219 kb on + strand, within HSERO_RS16055 at 3665.233 kb on + strand, within HSERO_RS16055 at 3665.243 kb on + strand, within HSERO_RS16055 at 3665.243 kb on + strand, within HSERO_RS16055 at 3665.311 kb on + strand, within HSERO_RS16055 at 3665.443 kb on + strand, within HSERO_RS16055 at 3665.539 kb on - strand, within HSERO_RS16055 at 3665.544 kb on - strand, within HSERO_RS16055 at 3665.966 kb on + strand at 3666.068 kb on - strand at 3666.068 kb on - strand at 3666.424 kb on - strand at 3666.607 kb on + strand, within HSERO_RS16065 at 3666.811 kb on - strand, within HSERO_RS16065
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 3,663,601 - HSERO_RS16040 0.84 -1.2 3,663,624 + HSERO_RS16040 0.86 -1.9 3,663,766 - HSERO_RS16045 0.12 +0.7 3,663,835 - HSERO_RS16045 0.47 -0.5 3,664,086 - HSERO_RS16050 0.23 +1.8 3,664,110 - HSERO_RS16050 0.27 +1.0 3,664,403 - HSERO_RS16050 0.75 +1.0 3,664,588 - -0.4 3,664,614 + +1.0 3,664,744 + HSERO_RS16055 0.12 -1.1 3,664,745 - HSERO_RS16055 0.12 +1.1 3,664,776 + HSERO_RS16055 0.14 -0.5 3,664,988 + HSERO_RS16055 0.29 -0.7 3,664,996 - HSERO_RS16055 0.30 +0.4 3,665,103 + HSERO_RS16055 0.37 +0.4 3,665,219 + HSERO_RS16055 0.45 -0.8 3,665,233 + HSERO_RS16055 0.46 +0.7 3,665,243 + HSERO_RS16055 0.47 -0.5 3,665,243 + HSERO_RS16055 0.47 -0.6 3,665,311 + HSERO_RS16055 0.52 +1.3 3,665,443 + HSERO_RS16055 0.61 -0.0 3,665,539 - HSERO_RS16055 0.68 +0.6 3,665,544 - HSERO_RS16055 0.68 +1.4 3,665,966 + -2.1 3,666,068 - +0.4 3,666,068 - -1.8 3,666,424 - +0.4 3,666,607 + HSERO_RS16065 0.12 -0.1 3,666,811 - HSERO_RS16065 0.20 +2.0
Or see this region's nucleotide sequence