Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16040

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,662,057	+		HSERO_RS16035	0.58	+2.0
3,662,193	+		HSERO_RS16035	0.67	+2.0
3,662,193	+		HSERO_RS16035	0.67	-2.1
3,662,370	+		HSERO_RS16035	0.79	+0.2
3,662,572	-				+1.4
3,662,602	+				-0.2
3,662,646	-				+1.0
3,663,489	+		HSERO_RS16040	0.72	-0.8
3,663,601	-		HSERO_RS16040	0.84	-1.2
3,663,624	+		HSERO_RS16040	0.86	-1.9
3,663,766	-		HSERO_RS16045	0.12	+0.7
3,663,835	-		HSERO_RS16045	0.47	-0.5
3,664,086	-		HSERO_RS16050	0.23	+1.8
3,664,110	-		HSERO_RS16050	0.27	+1.0
3,664,403	-		HSERO_RS16050	0.75	+1.0
3,664,588	-				-0.4
3,664,614	+				+1.0
3,664,744	+		HSERO_RS16055	0.12	-1.1
3,664,745	-		HSERO_RS16055	0.12	+1.1