Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16015

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,656,925	-				-0.1
3,656,932	+				-1.0
3,656,932	+				+0.3
3,657,029	+				+0.6
3,657,148	+		HSERO_RS16010	0.17	-0.4
3,657,293	-		HSERO_RS16010	0.41	+1.4
3,657,380	+		HSERO_RS16010	0.55	+3.0
3,657,452	+		HSERO_RS16010	0.66	-1.1
3,657,463	+		HSERO_RS16010	0.68	+0.7
3,657,463	+		HSERO_RS16010	0.68	+1.0
3,657,471	-		HSERO_RS16010	0.69	+0.2
3,657,632	+				+1.2
3,657,811	-				-1.1
3,657,893	+				+0.9
3,657,893	+				+0.1
3,657,980	-				-2.1
3,658,020	+				-1.4
3,658,065	+		HSERO_RS16015	0.13	+0.1
3,658,087	+		HSERO_RS16015	0.15	+0.6
3,658,191	+		HSERO_RS16015	0.25	-0.9
3,658,372	+		HSERO_RS16015	0.42	-1.0
3,658,380	-		HSERO_RS16015	0.42	+0.4
3,658,380	-		HSERO_RS16015	0.42	+0.7
3,658,509	+		HSERO_RS16015	0.55	+0.2
3,658,599	-		HSERO_RS16015	0.63	-1.9
3,658,714	-		HSERO_RS16015	0.74	+1.3
3,658,914	+				-0.2
3,658,922	-				-1.0
3,659,013	+				+0.1
3,659,129	-				-0.7
3,659,134	+				+0.7
3,659,134	+				+0.1
3,659,134	+				+0.9
3,659,142	-				-0.6
3,659,142	-				-0.2
3,659,264	-				+1.0
3,659,751	-		HSERO_RS16020	0.46	+3.0