Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15630

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,569,538	+				-0.2
3,569,602	-				+1.4
3,569,662	+				+1.5
3,569,820	-				-0.3
3,569,827	+		HSERO_RS15625	0.26	-0.6
3,569,958	+		HSERO_RS15625	0.49	-1.1
3,570,040	+		HSERO_RS15625	0.63	-0.7
3,570,042	+		HSERO_RS15625	0.64	+0.2
3,570,082	+		HSERO_RS15625	0.71	-0.3
3,570,240	-				+2.1
3,570,242	-				-0.1
3,570,242	-				-0.2
3,570,272	+				+1.4
3,570,280	-				+0.0
3,570,298	-				-1.3
3,570,393	+				+1.2
3,570,904	-		HSERO_RS15630	0.63	-1.2
3,571,143	-				-0.6
3,571,189	+				-0.9
3,571,264	+				-0.8
3,571,448	-		HSERO_RS15635	0.65	-0.5
3,571,571	+				-0.4
3,571,791	+		HSERO_RS15640	0.50	+0.4
3,571,848	+		HSERO_RS15640	0.61	-0.7
3,571,856	-		HSERO_RS15640	0.63	-0.7
3,571,856	-		HSERO_RS15640	0.63	+0.5
3,571,926	-		HSERO_RS15640	0.77	-2.3
3,571,931	-		HSERO_RS15640	0.78	-0.3
3,571,938	-		HSERO_RS15640	0.79	+0.3
3,572,126	-				+5.0