Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15550

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,553,089	-				-0.5
3,553,089	-				+0.1
3,553,248	+		HSERO_RS15545	0.11	+0.6
3,553,250	+		HSERO_RS15545	0.11	-0.5
3,553,251	+		HSERO_RS15545	0.11	-0.8
3,553,307	-		HSERO_RS15545	0.18	-1.3
3,553,372	-		HSERO_RS15545	0.27	+0.4
3,553,420	+		HSERO_RS15545	0.33	-0.2
3,553,464	+		HSERO_RS15545	0.39	+1.0
3,553,688	-		HSERO_RS15545	0.68	+0.2
3,553,698	-		HSERO_RS15545	0.69	+0.5
3,553,827	+		HSERO_RS15545	0.86	+0.3
3,553,897	+				+1.2
3,553,936	-				+0.4
3,554,194	+		HSERO_RS15550	0.11	-0.4
3,554,202	-		HSERO_RS15550	0.12	-0.7
3,554,937	+		HSERO_RS15550	0.55	-0.4
3,555,198	+		HSERO_RS15550	0.70	-0.5
3,555,739	+				+0.0
3,555,835	+		HSERO_RS15555	0.27	-0.3
3,555,991	+		HSERO_RS15555	0.57	-0.3
3,556,004	-		HSERO_RS15555	0.59	-0.9
3,556,033	-		HSERO_RS15555	0.65	+1.5
3,556,279	+				-0.1
3,556,279	+				-0.0
3,556,326	+				+0.3
3,556,334	-				+1.0