Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15110

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,427,098	+				+0.0
3,427,106	-				+0.2
3,427,106	-				-0.2
3,427,107	+				-0.5
3,427,125	-				+1.1
3,427,154	+				-0.4
3,427,176	+				-0.8
3,427,319	+				-1.0
3,427,322	-				-1.0
3,427,401	-				-1.5
3,427,599	-				+0.4
3,427,636	-				-0.1
3,427,725	-		HSERO_RS15105	0.31	-0.8
3,427,767	+		HSERO_RS15105	0.46	+0.5
3,427,773	-		HSERO_RS15105	0.48	-0.8
3,427,840	-		HSERO_RS15105	0.71	-0.8
3,428,024	+		HSERO_RS15110	0.16	-0.8
3,428,106	+		HSERO_RS15110	0.32	-0.5
3,428,272	+		HSERO_RS15110	0.64	-0.9
3,428,347	+		HSERO_RS15110	0.79	-0.6
3,428,449	+				-0.2
3,428,457	-				-0.7
3,428,516	+				+0.0
3,428,524	-				+0.5
3,428,695	-		HSERO_RS15115	0.15	-0.5
3,428,758	+		HSERO_RS15115	0.21	-0.7
3,428,766	-		HSERO_RS15115	0.21	-0.3
3,428,831	-		HSERO_RS15115	0.27	+0.2
3,428,882	+		HSERO_RS15115	0.31	+0.3
3,429,000	+		HSERO_RS15115	0.42	+0.2
3,429,082	+		HSERO_RS15115	0.49	-0.4
3,429,108	+		HSERO_RS15115	0.51	+0.3
3,429,335	+		HSERO_RS15115	0.70	+0.2
3,429,386	-		HSERO_RS15115	0.75	-0.3