Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15040

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,413,536	-		HSERO_RS15035	0.89	+0.5
3,413,611	+				-0.1
3,413,647	+				+0.3
3,413,655	-				+0.7
3,413,671	+				+0.9
3,413,718	+				+0.0
3,413,889	-				+0.3
3,413,999	+				-1.7
3,414,270	-		HSERO_RS15040	0.22	+1.5
3,414,617	+		HSERO_RS15040	0.41	-0.7
3,414,690	-		HSERO_RS15040	0.45	-0.4
3,414,949	+		HSERO_RS15040	0.60	-0.3
3,414,957	-		HSERO_RS15040	0.60	-1.8
3,414,957	-		HSERO_RS15040	0.60	+0.2
3,415,105	+		HSERO_RS15040	0.68	+0.1
3,415,252	+		HSERO_RS15040	0.76	+0.5
3,415,322	-		HSERO_RS15040	0.80	+1.5
3,415,330	-		HSERO_RS15040	0.80	-0.3
3,415,422	-		HSERO_RS15040	0.86	-0.5
3,415,422	-		HSERO_RS15040	0.86	-2.4
3,415,549	+				-0.0
3,415,604	-				-0.2
3,415,606	+				-0.1
3,415,606	+				+0.1
3,415,718	-				+0.8
3,415,802	+		HSERO_RS15045	0.22	-0.5
3,415,809	+		HSERO_RS15045	0.24	-0.7
3,415,843	-		HSERO_RS15045	0.37	-0.4
3,415,907	-		HSERO_RS15045	0.61	-0.3
3,416,011	+				-0.4
3,416,023	+				+0.0
3,416,033	+				-0.6
3,416,041	-				-1.5
3,416,343	-		HSERO_RS15050	0.68	+0.3
3,416,351	+		HSERO_RS15050	0.71	-1.1
3,416,353	-		HSERO_RS15050	0.72	-0.5
3,416,359	-		HSERO_RS15050	0.74	+0.5
3,416,585	+		HSERO_RS15055	0.21	-0.3