Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14960

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,398,634	-		HSERO_RS14955	0.63	-0.6
3,398,680	+		HSERO_RS14955	0.65	-0.1
3,399,153	-		HSERO_RS14955	0.87	+0.6
3,399,301	+				+0.1
3,399,492	+				-1.9
3,399,492	+				+0.0
3,399,574	+		HSERO_RS14960	0.23	+0.6
3,399,660	+		HSERO_RS14960	0.47	-0.4
3,399,761	-		HSERO_RS14960	0.74	+1.0
3,399,907	+				-0.3
3,399,949	-				-0.7
3,400,015	+				+1.1
3,400,015	+				+0.4
3,400,015	+				-0.7
3,400,027	+				+0.5
3,400,028	-		HSERO_RS14965	0.11	-0.1
3,400,156	+		HSERO_RS14965	0.34	+0.6
3,400,156	+		HSERO_RS14965	0.34	+0.4
3,400,852	-				+1.0
3,400,852	-		HSERO_RS14970	0.31	+1.6