Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14395

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,259,303	+		HSERO_RS14390	0.83	+0.5
3,259,486	+				-1.8
3,259,486	+				-0.9
3,259,486	+				-0.4
3,259,494	-				+0.7
3,259,494	-				+1.6
3,259,579	-				+0.1
3,259,630	-				+0.2
3,259,636	+				-0.2
3,259,743	-				+0.1
3,260,017	-				-0.3
3,260,017	-				-0.5
3,260,191	-				+0.2
3,260,191	-				+1.5
3,260,301	-		HSERO_RS14395	0.11	-0.3
3,260,381	+		HSERO_RS14395	0.29	-0.7
3,260,602	+		HSERO_RS14395	0.78	-0.3
3,260,664	+				-1.0
3,260,693	+				-0.0
3,260,693	+				-0.2
3,260,748	+				+0.8
3,260,756	-				+0.0
3,261,039	+		HSERO_RS14400	0.25	+0.5
3,261,047	-		HSERO_RS14400	0.26	-0.5
3,261,220	+		HSERO_RS14400	0.43	-1.0
3,261,228	-		HSERO_RS14400	0.44	-0.6
3,261,234	+		HSERO_RS14400	0.45	+0.6
3,261,239	+		HSERO_RS14400	0.45	-0.4
3,261,348	+		HSERO_RS14400	0.56	+0.2
3,261,426	-		HSERO_RS14400	0.64	-1.5
3,261,509	-		HSERO_RS14400	0.72	-0.5
3,261,587	-				-0.3
3,261,615	-		HSERO_RS14400	0.83	+0.2