Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13420

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,054,210	+				+4.1
3,054,341	-				-0.2
3,054,506	+				-1.2
3,054,727	-		HSERO_RS13415	0.53	-0.5
3,054,731	+		HSERO_RS13415	0.54	+0.2
3,054,738	+		HSERO_RS13415	0.56	+0.4
3,054,781	-		HSERO_RS13415	0.65	+0.1
3,054,804	+				+2.1
3,055,139	-				-0.6
3,055,258	-		HSERO_RS13420	0.14	-0.8
3,055,506	+		HSERO_RS13420	0.40	-0.7
3,055,858	-		HSERO_RS13420	0.78	-0.4
3,056,159	-				-0.2
3,056,351	+		HSERO_RS13425	0.37	+1.7
3,056,529	+				+0.0
3,056,910	-				-0.1
3,056,933	-				+1.1