Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12990

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,961,141	-		HSERO_RS12985	0.38	+0.5
2,961,465	-		HSERO_RS12985	0.67	+0.9
2,961,663	-		HSERO_RS12985	0.84	+0.0
2,961,783	+				-1.8
2,961,801	-				+0.8
2,961,983	-				-1.0
2,962,147	+		HSERO_RS12990	0.25	-1.6
2,962,340	+		HSERO_RS12990	0.54	-0.1
2,962,538	-		HSERO_RS12990	0.83	-0.9
2,962,569	-		HSERO_RS12990	0.88	-1.0
2,962,611	-				+1.1
2,963,119	-		HSERO_RS12995	0.61	+1.5
2,963,259	-		HSERO_RS12995	0.79	+0.5
2,963,325	+		HSERO_RS12995	0.87	-0.2
2,963,480	-				+0.2