Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12215

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,773,962	+		HSERO_RS12210	0.53	-0.6
2,773,980	-		HSERO_RS12210	0.54	-0.5
2,774,038	-		HSERO_RS12210	0.59	-2.4
2,774,060	-		HSERO_RS12210	0.60	+0.1
2,774,537	+				-0.9
2,774,634	-				+0.1
2,774,881	+		HSERO_RS12215	0.12	-1.1
2,774,996	+		HSERO_RS12215	0.28	-0.6
2,775,074	+		HSERO_RS12215	0.39	+0.4
2,776,155	-		HSERO_RS12220	0.83	+0.6
2,776,383	+				+0.7
2,776,521	+		HSERO_RS12225	0.15	-0.5