Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12190

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,767,086	+		HSERO_RS12185	0.60	+0.4
2,767,094	-		HSERO_RS12185	0.61	-0.1
2,767,290	+		HSERO_RS12185	0.72	+0.7
2,767,290	+		HSERO_RS12185	0.72	-0.2
2,767,298	-		HSERO_RS12185	0.73	+0.0
2,767,298	-		HSERO_RS12185	0.73	-0.2
2,767,298	-		HSERO_RS12185	0.73	+0.5
2,767,537	+		HSERO_RS12185	0.87	+0.2
2,767,545	-		HSERO_RS12185	0.87	+0.4
2,767,626	+				-1.3
2,767,656	+				+0.5
2,767,664	-				+2.2
2,767,664	-				+0.1
2,767,779	+				-1.5
2,767,816	-				+1.1
2,767,872	+				-0.2
2,767,872	+				-0.5
2,767,872	+				-0.4
2,767,880	-				+0.3
2,767,880	-				-0.2
2,767,880	-				+0.3
2,767,962	+				+0.2
2,768,027	-				+0.7
2,768,033	-				-0.2
2,768,185	-				-0.3
2,768,347	-		HSERO_RS12190	0.22	+3.1
2,768,564	+		HSERO_RS12190	0.40	-1.3
2,768,714	+		HSERO_RS12190	0.52	+0.3
2,768,815	-		HSERO_RS12190	0.60	-0.1
2,768,855	-		HSERO_RS12190	0.63	-0.5
2,768,928	+		HSERO_RS12190	0.69	-1.8
2,769,066	+		HSERO_RS12190	0.80	+0.5
2,769,206	-				-0.2
2,769,498	+				-0.5
2,769,506	-				+0.2
2,769,517	+				-0.2
2,769,525	-				-1.1
2,769,665	+		HSERO_RS12195	0.66	-1.4
2,769,665	+		HSERO_RS12195	0.66	+2.3
2,769,665	+		HSERO_RS12195	0.66	+3.5
2,769,673	-		HSERO_RS12195	0.70	+0.1
2,769,673	-		HSERO_RS12195	0.70	-1.4
2,769,753	-				+0.7
2,769,791	+				-0.2
2,769,840	+				-1.2
2,769,924	-				-0.2
2,769,974	-				+0.5
2,770,111	+		HSERO_RS12200	0.13	+0.5
2,770,308	-		HSERO_RS12200	0.21	+0.2