Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11870

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,703,323	+				+0.9
2,703,334	+				-1.0
2,703,342	-				+0.2
2,703,342	-				+1.5
2,703,389	-				-0.5
2,703,399	-				-0.5
2,703,472	+				+0.1
2,703,491	-				+0.0
2,703,699	-		HSERO_RS11865	0.48	-0.8
2,703,779	-		HSERO_RS11865	0.71	+1.8
2,703,803	-		HSERO_RS11865	0.77	-0.5
2,703,842	+		HSERO_RS11865	0.88	-0.4
2,703,842	+		HSERO_RS11865	0.88	+0.4
2,703,842	+		HSERO_RS11865	0.88	-0.6
2,703,842	+		HSERO_RS11865	0.88	+0.1
2,703,866	-				+1.0
2,703,899	+				-0.7
2,703,938	+				+0.8
2,704,047	+				-0.5
2,704,047	+				+0.9
2,704,055	-				+1.1
2,704,071	+				-0.2
2,704,099	-				+2.1
2,704,231	-				-0.1
2,704,254	+				-1.2
2,704,328	+		HSERO_RS11870	0.13	+1.4
2,704,336	-		HSERO_RS11870	0.17	+0.1
2,704,336	-		HSERO_RS11870	0.17	+0.3
2,704,457	+		HSERO_RS11870	0.73	-1.2
2,704,466	+		HSERO_RS11870	0.77	-0.9
2,704,474	-		HSERO_RS11870	0.81	-0.2
2,704,503	+				-1.2
2,704,527	+				+0.1
2,704,553	-				+0.3
2,704,699	+				-1.3
2,704,733	-				-0.8
2,705,086	-				+1.1
2,705,479	-		HSERO_RS11875	0.34	-0.1