Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11405

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,576,117	+		HSERO_RS11400	0.38	+0.1
2,576,280	+		HSERO_RS11400	0.54	+0.1
2,576,288	-		HSERO_RS11400	0.54	-0.2
2,576,455	+		HSERO_RS11400	0.70	-0.1
2,576,736	+				-0.1
2,576,736	+				+0.1
2,576,813	+				+0.5
2,576,869	-				-0.9
2,576,876	-				-0.3
2,577,037	+				-0.4
2,577,045	-				-0.6
2,577,103	+				-0.1
2,577,175	+		HSERO_RS11405	0.12	-3.5
2,577,205	+		HSERO_RS11405	0.15	-1.0
2,577,212	-		HSERO_RS11405	0.16	-0.5
2,577,213	-		HSERO_RS11405	0.16	-4.0
2,577,365	-		HSERO_RS11405	0.32	+0.2
2,577,644	-		HSERO_RS11405	0.62	+0.1
2,577,688	+		HSERO_RS11405	0.67	-1.4
2,577,727	-		HSERO_RS11405	0.71	-2.4
2,578,015	+				+0.8
2,578,367	+				-0.6
2,578,767	+		HSERO_RS11410	0.33	+0.2
2,578,842	+		HSERO_RS11410	0.43	-0.2
2,578,928	-		HSERO_RS11410	0.54	+1.0