Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10460

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,352,538	-		HSERO_RS10455	0.25	+0.3
2,352,549	-		HSERO_RS10455	0.26	-0.1
2,352,575	+				+0.5
2,352,583	-		HSERO_RS10455	0.29	+0.4
2,352,583	-		HSERO_RS10455	0.29	+0.0
2,352,900	-		HSERO_RS10455	0.54	+0.2
2,352,990	-		HSERO_RS10455	0.62	-0.4
2,353,024	-		HSERO_RS10455	0.64	+0.2
2,353,030	-		HSERO_RS10455	0.65	+1.5
2,353,218	-		HSERO_RS10455	0.80	+1.2
2,353,219	-		HSERO_RS10455	0.80	-0.2
2,353,340	-				+0.4
2,353,734	-		HSERO_RS10460	0.15	-1.0
2,354,127	+		HSERO_RS10460	0.45	-0.2
2,354,730	-				+0.9
2,355,009	-		HSERO_RS10465	0.19	+1.7
2,355,136	-		HSERO_RS10465	0.48	+0.1
2,355,374	-				+0.1
2,355,470	-				+0.3