Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10010

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,264,506	+				-0.2
2,264,615	+		HSERO_RS10005	0.19	+0.2
2,265,125	-		HSERO_RS10005	0.76	-0.7
2,265,129	+		HSERO_RS10005	0.76	-0.1
2,265,133	+		HSERO_RS10005	0.77	-0.0
2,265,147	-		HSERO_RS10005	0.78	+0.8
2,265,157	-		HSERO_RS10005	0.79	-1.4
2,265,240	+		HSERO_RS10005	0.88	-0.7
2,265,248	-		HSERO_RS10005	0.89	-0.6
2,265,395	-				+0.1
2,265,423	-				+0.2
2,265,454	+				-0.3
2,265,478	+				-0.7
2,265,527	+				+0.2
2,266,338	+				+1.5
2,266,421	+		HSERO_RS10010	0.71	-1.9
2,266,443	-		HSERO_RS10010	0.73	-0.3
2,266,468	-		HSERO_RS10010	0.75	-0.2
2,267,185	+		HSERO_RS10015	0.33	+0.9
2,267,689	+				-0.2
2,267,697	-				-0.5
2,267,789	-				+1.3