Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09670

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09665 and HSERO_RS09670 are separated by 103 nucleotidesHSERO_RS09670 and HSERO_RS09675 are separated by 146 nucleotidesHSERO_RS09675 and HSERO_RS09680 are separated by 10 nucleotides HSERO_RS09665: HSERO_RS09665 - GTPase Era, at 2,194,065 to 2,194,994 _RS09665 HSERO_RS09670: HSERO_RS09670 - DNA repair protein RecO, at 2,195,098 to 2,195,958 _RS09670 HSERO_RS09675: HSERO_RS09675 - pyridoxine 5'-phosphate synthase, at 2,196,105 to 2,196,878 _RS09675 HSERO_RS09680: HSERO_RS09680 - 4'-phosphopantetheinyl transferase, at 2,196,889 to 2,197,281 _RS09680 Position (kb) 2195 2196Strain fitness (log2 ratio) -1 0 1at 2194.946 kb on + strandat 2195.054 kb on - strandat 2195.573 kb on - strand, within HSERO_RS09670at 2195.750 kb on + strand, within HSERO_RS09670at 2195.995 kb on - strandat 2195.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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2,194,946 + -1.4
2,195,054 - +0.1
2,195,573 - HSERO_RS09670 0.55 -0.4
2,195,750 + HSERO_RS09670 0.76 -1.1
2,195,995 - -0.5
2,195,999 + -0.6

Or see this region's nucleotide sequence