Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09290

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,110,703	+				-1.4
2,110,705	+				+0.0
2,110,711	-				+0.6
2,110,812	+				+0.5
2,111,000	+				+1.1
2,111,089	-				+0.3
2,111,477	-				+0.6
2,111,562	-				+1.1
2,111,670	+				+0.2
2,111,678	-				-0.4
2,111,952	+		HSERO_RS09290	0.10	+1.5
2,112,213	+		HSERO_RS09290	0.21	-0.2
2,112,597	-		HSERO_RS09290	0.36	+0.2
2,112,642	-		HSERO_RS09290	0.38	-1.3
2,112,836	-		HSERO_RS09290	0.45	-1.1
2,112,906	-		HSERO_RS09290	0.48	-0.6
2,113,080	+		HSERO_RS09290	0.55	-0.4
2,113,080	-		HSERO_RS09290	0.55	-2.1
2,113,281	-		HSERO_RS09290	0.63	+0.5
2,114,127	-				-0.5
2,114,521	+		HSERO_RS09295	0.26	+0.9
2,114,535	-		HSERO_RS09295	0.28	-0.2
2,114,683	+		HSERO_RS09295	0.48	+0.3
2,114,730	-		HSERO_RS09295	0.55	-0.7
2,114,813	+		HSERO_RS09295	0.66	-0.3
2,114,978	+		HSERO_RS09295	0.88	+0.4
2,115,196	-				+0.1
2,115,207	-				-0.9