Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09155

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,080,776	-				+0.3
2,080,851	+				-0.8
2,080,907	+		HSERO_RS09150	0.14	+0.0
2,080,953	+		HSERO_RS09150	0.20	+0.1
2,081,161	-		HSERO_RS09150	0.43	-0.4
2,081,215	+		HSERO_RS09150	0.49	-0.8
2,081,215	+		HSERO_RS09150	0.49	-0.5
2,081,223	-		HSERO_RS09150	0.50	+0.1
2,081,223	-		HSERO_RS09150	0.50	+1.5
2,081,228	-		HSERO_RS09150	0.51	-0.6
2,081,361	+		HSERO_RS09150	0.66	-1.0
2,081,450	+		HSERO_RS09150	0.76	+1.2
2,081,588	-				+0.5
2,081,723	+				-1.1
2,081,810	-				+0.1
2,081,839	-				+0.1
2,081,942	+		HSERO_RS09155	0.14	+0.5
2,082,056	-		HSERO_RS09155	0.20	-0.2
2,082,130	+		HSERO_RS09155	0.23	-0.5
2,082,463	+		HSERO_RS09155	0.40	-1.0
2,082,640	-		HSERO_RS09155	0.49	+0.6
2,082,662	-		HSERO_RS09155	0.50	+0.2
2,082,832	+		HSERO_RS09155	0.59	-0.3
2,082,942	-		HSERO_RS09155	0.64	-1.5
2,082,995	-		HSERO_RS09155	0.67	-0.7
2,083,018	-		HSERO_RS09155	0.68	-1.3
2,083,057	-		HSERO_RS09155	0.70	-1.1
2,083,213	+		HSERO_RS09155	0.78	-0.6
2,083,281	+		HSERO_RS09155	0.81	-1.4
2,083,299	-		HSERO_RS09155	0.82	-0.1
2,083,489	+				-0.2
2,083,692	-				-0.1
2,083,712	-				+0.4
2,083,741	-				+0.2
2,083,817	-				-0.1
2,083,819	+				+0.0
2,083,827	-				+0.3
2,083,930	-				-0.7
2,084,018	+				+1.5
2,084,064	-		HSERO_RS09160	0.12	-1.6
2,084,150	+		HSERO_RS09160	0.18	+0.1
2,084,369	-		HSERO_RS09160	0.34	+0.5
2,084,466	+		HSERO_RS09160	0.41	-0.2
2,084,566	-		HSERO_RS09160	0.49	+0.1
2,084,588	-		HSERO_RS09160	0.50	+0.4
2,084,593	-				+2.8