Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08655

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08650 and HSERO_RS08655 are separated by 1 nucleotidesHSERO_RS08655 and HSERO_RS08660 are separated by 76 nucleotides HSERO_RS08650: HSERO_RS08650 - acetolactate synthase, at 1,963,637 to 1,965,355 _RS08650 HSERO_RS08655: HSERO_RS08655 - acetolactate synthase, at 1,965,357 to 1,965,848 _RS08655 HSERO_RS08660: HSERO_RS08660 - ketol-acid reductoisomerase, at 1,965,925 to 1,966,941 _RS08660 Position (kb) 1965 1966Strain fitness (log2 ratio) -2 -1 0 1at 1964.357 kb on - strand, within HSERO_RS08650at 1964.513 kb on - strand, within HSERO_RS08650at 1964.616 kb on - strand, within HSERO_RS08650at 1964.851 kb on + strand, within HSERO_RS08650at 1964.998 kb on - strand, within HSERO_RS08650at 1965.003 kb on - strand, within HSERO_RS08650at 1965.289 kb on + strandat 1965.297 kb on - strandat 1965.457 kb on + strand, within HSERO_RS08655at 1965.465 kb on - strand, within HSERO_RS08655at 1965.489 kb on + strand, within HSERO_RS08655at 1965.877 kb on + strandat 1965.903 kb on + strandat 1965.911 kb on - strandat 1966.060 kb on - strand, within HSERO_RS08660at 1966.060 kb on - strand, within HSERO_RS08660at 1966.731 kb on + strand, within HSERO_RS08660at 1966.731 kb on + strand, within HSERO_RS08660at 1966.772 kb on - strand, within HSERO_RS08660

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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1,964,357 - HSERO_RS08650 0.42 -0.1
1,964,513 - HSERO_RS08650 0.51 -0.3
1,964,616 - HSERO_RS08650 0.57 +1.0
1,964,851 + HSERO_RS08650 0.71 +0.4
1,964,998 - HSERO_RS08650 0.79 +0.8
1,965,003 - HSERO_RS08650 0.79 -0.9
1,965,289 + -0.5
1,965,297 - -0.3
1,965,457 + HSERO_RS08655 0.20 -1.2
1,965,465 - HSERO_RS08655 0.22 -2.2
1,965,489 + HSERO_RS08655 0.27 -1.2
1,965,877 + +0.3
1,965,903 + -0.2
1,965,911 - +0.3
1,966,060 - HSERO_RS08660 0.13 +0.3
1,966,060 - HSERO_RS08660 0.13 +0.2
1,966,731 + HSERO_RS08660 0.79 +0.6
1,966,731 + HSERO_RS08660 0.79 +0.8
1,966,772 - HSERO_RS08660 0.83 +0.3

Or see this region's nucleotide sequence