Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08640

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,961,169	+				+1.4
1,961,177	-				+0.8
1,961,486	-		HSERO_RS08635	0.30	-0.5
1,961,486	-		HSERO_RS08635	0.30	-0.5
1,961,486	-		HSERO_RS08635	0.30	-2.2
1,961,766	+		HSERO_RS08635	0.62	+0.0
1,961,788	+		HSERO_RS08635	0.64	+2.0
1,962,011	+		HSERO_RS08635	0.90	+0.7
1,962,151	-		HSERO_RS08640	0.11	-1.5
1,962,373	+		HSERO_RS08640	0.65	-0.1
1,962,711	-		HSERO_RS08645	0.34	+1.3
1,962,711	-		HSERO_RS08645	0.34	-0.2
1,962,759	-		HSERO_RS08645	0.43	+0.7
1,962,787	+		HSERO_RS08645	0.47	+0.1
1,962,865	+		HSERO_RS08645	0.61	+2.1
1,963,030	+		HSERO_RS08645	0.89	+0.9
1,963,091	+				+0.7
1,963,118	+				+0.7
1,963,260	+				+0.7
1,963,376	-				+0.4
1,963,428	-				+0.2
1,963,428	-				+2.0
1,963,428	-				+4.0
1,963,441	-				+0.1
1,963,509	+				-0.2