Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08605

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,955,496	+		HSERO_RS08590	0.60	-0.0
1,955,511	+		HSERO_RS08590	0.63	-1.8
1,955,618	-		HSERO_RS08590	0.77	+0.0
1,955,715	+				+0.8
1,955,882	-				-0.5
1,955,958	-				-0.5
1,956,015	-				-0.4
1,956,407	-				-0.7
1,956,499	-				-0.9
1,957,136	+		HSERO_RS08605	0.78	+0.0
1,957,144	-		HSERO_RS08605	0.79	-1.2
1,957,414	-				-0.2
1,957,414	-				-1.8
1,957,414	-				-0.3
1,957,643	+		HSERO_RS08610	0.54	-0.1
1,957,678	-		HSERO_RS08610	0.60	+0.4
1,957,692	+		HSERO_RS08610	0.63	+0.4
1,957,768	-		HSERO_RS08610	0.77	+0.3
1,957,821	-		HSERO_RS08610	0.87	-0.7
1,957,860	+				-1.8
1,957,960	-				+0.4
1,958,296	+		HSERO_RS08615	0.32	+0.1