Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08470 and HSERO_RS08475 overlap by 4 nucleotides HSERO_RS08475 and HSERO_RS08480 overlap by 4 nucleotides HSERO_RS08480 and HSERO_RS08485 overlap by 1 nucleotides HSERO_RS08485 and HSERO_RS08490 are separated by 131 nucleotides
HSERO_RS08470: HSERO_RS08470 - chemotaxis protein, at 1,927,820 to 1,928,662
_RS08470
HSERO_RS08475: HSERO_RS08475 - chemotaxis protein CheY, at 1,928,659 to 1,929,030
_RS08475
HSERO_RS08480: HSERO_RS08480 - chemotaxis protein CheA, at 1,929,027 to 1,931,540
_RS08480
HSERO_RS08485: HSERO_RS08485 - hypothetical protein, at 1,931,540 to 1,931,785
_RS08485
HSERO_RS08490: HSERO_RS08490 - chemotaxis protein CheY, at 1,931,917 to 1,932,297
_RS08490
Position (kb) 1929
1930
1931
1932 Strain fitness (log2 ratio) -1
0
1
2
3 at 1928.077 kb on + strand, within HSERO_RS08470 at 1928.135 kb on + strand, within HSERO_RS08470 at 1928.154 kb on - strand, within HSERO_RS08470 at 1928.187 kb on - strand, within HSERO_RS08470 at 1928.270 kb on - strand, within HSERO_RS08470 at 1928.336 kb on - strand, within HSERO_RS08470 at 1928.553 kb on + strand, within HSERO_RS08470 at 1928.610 kb on - strand at 1928.914 kb on + strand, within HSERO_RS08475 at 1928.952 kb on + strand, within HSERO_RS08475 at 1929.020 kb on - strand at 1929.169 kb on - strand at 1929.326 kb on + strand, within HSERO_RS08480 at 1929.425 kb on - strand, within HSERO_RS08480 at 1929.425 kb on - strand, within HSERO_RS08480 at 1929.427 kb on - strand, within HSERO_RS08480 at 1929.459 kb on + strand, within HSERO_RS08480 at 1929.560 kb on + strand, within HSERO_RS08480 at 1929.701 kb on + strand, within HSERO_RS08480 at 1929.720 kb on + strand, within HSERO_RS08480 at 1929.976 kb on - strand at 1930.003 kb on + strand, within HSERO_RS08480 at 1930.029 kb on - strand, within HSERO_RS08480 at 1930.066 kb on - strand, within HSERO_RS08480 at 1930.323 kb on - strand, within HSERO_RS08480 at 1930.340 kb on + strand, within HSERO_RS08480 at 1930.459 kb on - strand, within HSERO_RS08480 at 1930.571 kb on + strand, within HSERO_RS08480 at 1930.619 kb on + strand, within HSERO_RS08480 at 1930.694 kb on + strand, within HSERO_RS08480 at 1930.732 kb on - strand, within HSERO_RS08480 at 1930.732 kb on - strand, within HSERO_RS08480 at 1930.734 kb on - strand at 1930.750 kb on + strand, within HSERO_RS08480 at 1930.889 kb on + strand, within HSERO_RS08480 at 1931.040 kb on - strand, within HSERO_RS08480 at 1931.177 kb on + strand, within HSERO_RS08480 at 1931.210 kb on - strand, within HSERO_RS08480 at 1931.310 kb on - strand at 1931.375 kb on - strand at 1931.394 kb on - strand at 1931.505 kb on + strand at 1931.585 kb on + strand, within HSERO_RS08485 at 1931.925 kb on + strand at 1931.991 kb on - strand, within HSERO_RS08490 at 1932.292 kb on + strand at 1932.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,928,077 + HSERO_RS08470 0.30 +1.1 1,928,135 + HSERO_RS08470 0.37 -0.6 1,928,154 - HSERO_RS08470 0.40 -0.0 1,928,187 - HSERO_RS08470 0.44 +0.4 1,928,270 - HSERO_RS08470 0.53 +1.1 1,928,336 - HSERO_RS08470 0.61 +0.1 1,928,553 + HSERO_RS08470 0.87 +0.5 1,928,610 - +0.4 1,928,914 + HSERO_RS08475 0.69 -0.6 1,928,952 + HSERO_RS08475 0.79 +0.1 1,929,020 - -0.4 1,929,169 - +0.4 1,929,326 + HSERO_RS08480 0.12 -0.4 1,929,425 - HSERO_RS08480 0.16 -0.7 1,929,425 - HSERO_RS08480 0.16 +0.9 1,929,427 - HSERO_RS08480 0.16 +2.2 1,929,459 + HSERO_RS08480 0.17 -1.7 1,929,560 + HSERO_RS08480 0.21 +0.5 1,929,701 + HSERO_RS08480 0.27 -0.0 1,929,720 + HSERO_RS08480 0.28 +0.7 1,929,976 - +2.2 1,930,003 + HSERO_RS08480 0.39 -0.6 1,930,029 - HSERO_RS08480 0.40 +0.1 1,930,066 - HSERO_RS08480 0.41 +0.3 1,930,323 - HSERO_RS08480 0.52 -0.0 1,930,340 + HSERO_RS08480 0.52 -0.7 1,930,459 - HSERO_RS08480 0.57 +0.2 1,930,571 + HSERO_RS08480 0.61 +0.6 1,930,619 + HSERO_RS08480 0.63 +0.7 1,930,694 + HSERO_RS08480 0.66 -1.1 1,930,732 - HSERO_RS08480 0.68 -0.7 1,930,732 - HSERO_RS08480 0.68 -1.2 1,930,734 - +0.7 1,930,750 + HSERO_RS08480 0.69 -0.6 1,930,889 + HSERO_RS08480 0.74 +1.4 1,931,040 - HSERO_RS08480 0.80 -0.5 1,931,177 + HSERO_RS08480 0.86 -0.6 1,931,210 - HSERO_RS08480 0.87 -0.6 1,931,310 - -1.0 1,931,375 - -0.3 1,931,394 - -1.5 1,931,505 + +0.2 1,931,585 + HSERO_RS08485 0.18 -0.9 1,931,925 + -0.0 1,931,991 - HSERO_RS08490 0.19 +3.6 1,932,292 + +1.0 1,932,319 - -1.3
Or see this region's nucleotide sequence