Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08420

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,917,648	-		HSERO_RS08415	0.45	-0.3
1,917,651	+		HSERO_RS08415	0.46	-0.6
1,917,716	-		HSERO_RS08415	0.51	+2.1
1,917,716	-		HSERO_RS08415	0.51	+1.1
1,917,743	+		HSERO_RS08415	0.53	-1.5
1,917,823	+		HSERO_RS08415	0.60	+0.0
1,917,874	+		HSERO_RS08415	0.64	+0.9
1,917,939	+		HSERO_RS08415	0.70	-1.7
1,918,126	-		HSERO_RS08415	0.86	-2.2
1,918,534	-				+0.8
1,918,566	-				+0.4
1,918,646	-		HSERO_RS08420	0.21	-1.9
1,918,914	+		HSERO_RS08420	0.79	-1.3
1,919,127	+				+0.8
1,919,194	+		HSERO_RS08425	0.25	+0.4
1,919,207	-		HSERO_RS08425	0.31	-0.8
1,919,343	-		HSERO_RS08425	0.84	-0.7
1,919,345	+		HSERO_RS08425	0.85	-0.4
1,919,345	+		HSERO_RS08425	0.85	+1.6
1,919,404	-				-0.3
1,919,449	+				-0.4
1,919,810	+		HSERO_RS08430	0.55	-2.1
1,919,833	+		HSERO_RS08430	0.59	+0.4
1,919,911	-		HSERO_RS08430	0.69	+2.0
1,919,928	-		HSERO_RS08430	0.72	-0.4
1,919,954	+		HSERO_RS08430	0.76	-1.8
1,919,961	+		HSERO_RS08430	0.77	-2.3
1,919,992	-		HSERO_RS08430	0.81	+0.0