Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08105

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,851,940	+		HSERO_RS08100	0.36	+0.0
1,851,950	+		HSERO_RS08100	0.36	-0.2
1,851,999	+		HSERO_RS08100	0.41	+0.7
1,852,002	-		HSERO_RS08100	0.41	+0.1
1,852,142	+		HSERO_RS08100	0.53	-0.3
1,852,437	+		HSERO_RS08100	0.78	-0.4
1,852,445	-		HSERO_RS08100	0.78	+0.0
1,852,481	-		HSERO_RS08100	0.82	-0.3
1,852,488	-		HSERO_RS08100	0.82	+0.7
1,852,709	-				-0.3
1,852,765	+				-0.3
1,852,773	-				-0.4
1,852,970	-				-0.4
1,853,278	+		HSERO_RS08105	0.30	-0.4
1,853,621	+		HSERO_RS08105	0.54	-1.1
1,853,699	+		HSERO_RS08105	0.60	-0.8
1,853,828	+		HSERO_RS08105	0.69	-1.2
1,853,883	+		HSERO_RS08105	0.73	+0.7
1,854,096	+		HSERO_RS08105	0.88	+0.4
1,854,417	-				-0.5
1,854,460	-		HSERO_RS08110	0.13	-0.1
1,854,541	-		HSERO_RS08110	0.21	-0.8
1,854,543	+		HSERO_RS08110	0.21	-0.5
1,854,551	-		HSERO_RS08110	0.22	-2.1
1,854,604	-		HSERO_RS08110	0.28	+1.0
1,854,919	+		HSERO_RS08110	0.60	-0.4
1,854,967	+		HSERO_RS08110	0.65	-0.4