Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08015

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,833,114	+		HSERO_RS08010	0.39	-0.5
1,833,160	+		HSERO_RS08010	0.44	+0.8
1,833,220	-		HSERO_RS08010	0.50	-0.3
1,833,251	+		HSERO_RS08010	0.54	+1.4
1,833,470	+		HSERO_RS08010	0.78	+1.7
1,833,470	+		HSERO_RS08010	0.78	-0.1
1,833,503	-		HSERO_RS08010	0.82	+0.9
1,833,645	+				-0.1
1,833,657	+				+0.5
1,833,722	-				-0.5
1,833,826	-				+1.0
1,833,845	+		HSERO_RS08015	0.12	+1.3
1,833,950	-		HSERO_RS08015	0.37	+0.2
1,834,016	-		HSERO_RS08015	0.52	+0.7
1,834,337	-				-0.2
1,834,383	+				+0.4
1,834,383	+				-0.5
1,834,471	+		HSERO_RS08020	0.11	-1.0
1,834,677	-		HSERO_RS08020	0.20	-0.6
1,834,724	+		HSERO_RS08020	0.22	-0.4
1,834,732	-		HSERO_RS08020	0.23	-0.3
1,834,770	+		HSERO_RS08020	0.24	-0.2
1,834,844	-		HSERO_RS08020	0.28	+0.3
1,834,888	+		HSERO_RS08020	0.30	+0.3
1,834,996	-		HSERO_RS08020	0.35	-0.5