Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07890

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,802,596	+				+1.0
1,802,793	-		HSERO_RS07885	0.21	+1.0
1,802,806	+		HSERO_RS07885	0.22	-0.4
1,802,935	+		HSERO_RS07885	0.35	-1.3
1,803,172	+		HSERO_RS07885	0.58	+0.1
1,803,346	+		HSERO_RS07885	0.76	+2.0
1,803,587	+				-0.0
1,803,636	-		HSERO_RS07890	0.21	+0.2
1,803,636	-		HSERO_RS07890	0.21	-0.7
1,803,854	-				-0.2
1,803,854	-				+0.1
1,803,944	-				-1.1
1,803,947	+				+0.3
1,804,097	+				-0.2
1,804,110	-				-1.8
1,804,405	-		HSERO_RS07895	0.22	-1.0
1,804,500	-		HSERO_RS07895	0.28	-0.3
1,804,578	-		HSERO_RS07895	0.33	-0.9
1,804,636	-		HSERO_RS07895	0.36	-0.9
1,804,659	+		HSERO_RS07895	0.38	-0.1
1,804,739	+		HSERO_RS07895	0.43	-0.0
1,804,739	+		HSERO_RS07895	0.43	-0.3
1,804,747	-		HSERO_RS07895	0.43	+0.2